Python API referenceΒΆ

The GO-PCA Python API currently consists of five classes that contain GO-PCA parameter settings, perform the analysis, and represent the results:

GOPCAConfig(user_params, gene_sets[, ...]) A GO-PCA configuration.
GOPCAParams([params]) A set of GO-PCA parameters.
GOPCA(matrix, configs, **kwargs) Class for performing GO-PCA.
GOPCARun(sig_matrix, gopca_version, ...) A GO-PCA run.
GOPCASignatureMatrix(*args, **kwargs) A GO-PCA signature matrix (the result of a GO-PCA run).
GOPCASignature(pc, gse_result, seed, matrix) A GO-PCA signature.